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 spatiotemporal recurrent state space model


Reviews: Scalable Bayesian inference of dendritic voltage via spatiotemporal recurrent state space models

Neural Information Processing Systems

Minor comments: - The panel labels have inconsistent styles. Some are just the label with a period, some have parentheses with a period, some have parentheses without a period.


Reviews: Scalable Bayesian inference of dendritic voltage via spatiotemporal recurrent state space models

Neural Information Processing Systems

The article considers a novel application of the recurrent switching linear dynamical system model to denoising dendritic voltages. The paper is very well written, the problem well motivated with compelling experiments.


Scalable Bayesian inference of dendritic voltage via spatiotemporal recurrent state space models

Neural Information Processing Systems

Recent advances in optical voltage sensors have brought us closer to a critical goal in cellular neuroscience: imaging the full spatiotemporal voltage on a dendritic tree. However, current sensors and imaging approaches still face significant limitations in SNR and sampling frequency; therefore statistical denoising and interpolation methods remain critical for understanding single-trial spatiotemporal dendritic voltage dynamics. Previous denoising approaches were either based on an inadequate linear voltage model or scaled poorly to large trees. Here we introduce a scalable fully Bayesian approach. We develop a generative nonlinear model that requires few parameters per compartment of the cell but is nonetheless flexible enough to sample realistic spatiotemporal data.


Scalable Bayesian inference of dendritic voltage via spatiotemporal recurrent state space models

Sun, Ruoxi, Linderman, Scott, Kinsella, Ian, Paninski, Liam

Neural Information Processing Systems

Recent advances in optical voltage sensors have brought us closer to a critical goal in cellular neuroscience: imaging the full spatiotemporal voltage on a dendritic tree. However, current sensors and imaging approaches still face significant limitations in SNR and sampling frequency; therefore statistical denoising and interpolation methods remain critical for understanding single-trial spatiotemporal dendritic voltage dynamics. Previous denoising approaches were either based on an inadequate linear voltage model or scaled poorly to large trees. Here we introduce a scalable fully Bayesian approach. We develop a generative nonlinear model that requires few parameters per compartment of the cell but is nonetheless flexible enough to sample realistic spatiotemporal data.